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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_53086.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 39042.7 Da PI: 6.7425 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.7 | 6.3e-55 | 9 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++e+++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ MLOC_53086.2 9 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQEkcriGPEEEQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKPIY 104 69****************************.99**************95343322335669************************************ PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + k+ lvg++ktLv+ykgrap+g+k+dW+mheyrle MLOC_53086.2 105 A-KHCLVGMRKTLVYYKGRAPNGQKSDWIMHEYRLE 139 *.899*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-61 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.189 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-28 | 10 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MSGSTQPQVP PGFRFHPTDE ELVDYYLRKK VASRRIDLNV IKDVDLYKIE PWDLQEKCRI 60 GPEEEQSDWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KPIYAKHCLV GMRKTLVYYK 120 GRAPNGQKSD WIMHEYRLET NENGPPQEEG WVVCRVFKKR LPTTRRDLDH DAPCWYVDDD 180 GPFMHDLNSP MRGMPPHHSM ALQEQHLQML NNTYKRELKL QYQMPNHHHV LNTIPHELES 240 PSSFHSLLVS QDDHQINVHH AQHHHVQLID HAVDDQAATD WRVLDKFVAS QLSNDAAKGV 300 DYAHEGDILQ LNEKVQEVAT DYASTSTSSS QVDPWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-50 | 5 | 160 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-50 | 5 | 160 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-50 | 5 | 160 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-50 | 5 | 160 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-50 | 5 | 160 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-50 | 5 | 160 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304791.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Refseq | XP_014754958.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-116 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | M0WN19 | 0.0 | M0WN19_HORVD; Uncharacterized protein | ||||
STRING | MLOC_53086.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12102 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-101 | NAC 007 |